PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P00500_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 272aa    MW: 28953.4 Da    PI: 8.8824
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P00500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.5e-4054144291
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                            ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +
  GSMUA_Achr4P00500_001  54 PPKRTSNKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSVSVP 141
                            789******************************************************************9998777777777755555 PP

                    TCP  89 kaa 91 
                            ++ 
  GSMUA_Achr4P00500_001 142 SHL 144
                            333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3958151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.84560114IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEGEAGGSRR PNFPLQLLEK KEEDSCSSSA YPSLAISSTT AAAELAVDRL RKPPPKRTSN  60
KDRHTKVEGR GRRIRMPALC AARVFQLTRE LGHKTDGETI EWLLQQAEPA VIAATGTGTI  120
PANFTSLNIS LRSSGSSVSV PSHLRAANYF NSVAAALPGT SLRIHNEWEH MVGGNSQSIW  180
TFPQVGSTTM FRGSMSSGLH FMNFPTPMAL LPSQQLGLGS GGGGGGGGEG HMGIPSALNM  240
YRSPSTSEAM PSASQQGHRD CERHDTMSTS DS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410394.11e-108PREDICTED: transcription factor TCP15-like
SwissprotQ9C9L29e-57TCP15_ARATH; Transcription factor TCP15
TrEMBLM0SJW70.0M0SJW7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P00500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.18e-50TCP family protein